Pathogen and test library

Every card carries the code, the lab, and the reason it matters.

A first-wave catalog for endemic, epidemic, pandemic, emerging, and biothreat testing. Install the same definitions into a public health laboratory and they land in Virology, Molecular, Enterics, LRN, or Water, not in a junk drawer.

21 entries

Coded first. Narrative second.

Pandemic relevanceVIRCOV2

SARS-CoV-2 RT-PCR

SARS-CoV-2

LOINC 94500-6
Open entry
Epidemic potentialMOLRESP4

Influenza A/B + SARS-CoV-2 + RSV RNA panel

Influenza A/B, SARS-CoV-2, RSV

LOINC 92142-9LOINC 92141-1LOINC 94500-6
Open entry
EmergingMOLFLUSUB

Influenza A subtyping (H3 / pdmH1 / H5)

Influenza A (H3, pdmH1, H5)

LOINC 49524-2LOINC 55465-9LOINC 68986-9
Open entry
EmergingMOLH5RNA

Influenza A H5 (HPAI) RNA

Influenza A H5N1

LOINC 68986-9
Open entry
Epidemic potentialMOLTRIPLEX

Dengue + Chikungunya + Zika RNA panel

Dengue, Chikungunya, Zika

LOINC 81154-7LOINC 81154-7LOINC 79190-5
Open entry
Epidemic potentialMOLZIKV

Zika virus RNA

Zika virus

LOINC 79190-5
Open entry
EndemicSERWNVIGM

West Nile virus IgM

West Nile virus

LOINC 31797-7
Open entry
EmergingMOLOROV

Oropouche virus RNA

Oropouche virus

LOINC 100383-8
Open entry
EmergingMOLEEERNA

Eastern equine encephalitis virus RNA

Eastern equine encephalitis virus

LOINC 35359-4
Open entry
EndemicENTENTC

Enteric culture

Enteric bacterial pathogens

LOINC 6463-4
Open entry
Epidemic potentialMOLGIPANEL

GI pathogen multiplex (stool NAA)

GI multiplex

LOINC 79381-0LOINC 79381-0LOINC 79381-0
Open entry
Epidemic potentialENTSTEC

Shiga toxin (stx1 / stx2)

Shiga toxin-producing E. coli

LOINC 33675-3LOINC 33676-1
Open entry
EndemicSERHIV12

HIV-1/2 Ag/Ab combo

HIV-1/2

LOINC 56888-1
Open entry
Epidemic potentialMOLMPOX

Mpox / orthopox virus DNA

Monkeypox virus

LOINC 100434-0
Open entry
EndemicTBMTBPCR

Mycobacterium tuberculosis complex PCR

Mycobacterium tuberculosis complex

LOINC 38379-4
Open entry
BiothreatLRNBANT

Bacillus anthracis (LRN rule-out)

Bacillus anthracis

LOINC 33675-3
Open entry
BiothreatLRNYPES

Yersinia pestis (LRN rule-out)

Yersinia pestis

LOINC 33676-1
Open entry
Epidemic potentialMOLCPO

Carbapenemase gene panel

Carbapenemase-producing organisms

LOINC 85502-3LOINC 85503-1LOINC 85504-9
Open entry
EndemicMOLMECA

mecA (MRSA marker)

Staphylococcus aureus (MRSA)

LOINC 48813-0
Open entry
EmergingMOLMNGS

Metagenomic sequencing (unknown etiology)

Metagenomic / unknown etiology

LOINC 94187-4
Open entry
Epidemic potentialWATERWWRESP

Wastewater respiratory signal

Wastewater SARS-CoV-2 / influenza

LOINC 96896-8LOINC 92142-9
Open entry

The same catalog installs into the LIMS

Each entry is a portable test-definition bundle: analytes, allowable results, LOINC on the observation, SNOMED on the value, and a destination lab code. When a PHL imports the pack, Molecular tests go to MOL, serology to SER, LRN rule-outs to LRN. Nothing arrives as a global orphan unless the receiving lab does not have that department yet.

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